get_marker_genes {SC3}R Documentation

Calculate marker genes

Description

Find marker genes in the dataset. The get_auroc is used to calculate marker values for each gene.

Usage

get_marker_genes(dataset, labels)

Arguments

dataset

expression matrix

labels

cell labels corresponding clusters

Value

data.frame containing the marker genes, corresponding cluster indexes and adjusted p-values

Examples

d <- get_marker_genes(yan[1:10,], as.numeric(ann[,1]))
d


[Package SC3 version 1.22.0 Index]