bait {RpsiXML}R Documentation

Extract bait, prey, participant, inhibitor, pubmed, confidence value, interaction type, or neutral component information from an object of psimi25Interaction-class

Description

The functions return bait/prey UniProt identifier of the given psimi25Interaction object.

Usage

bait(x,...)
prey(x,...)
participant(x,...)
inhibitor(x,...)
pubmedID(x,...)
confidenceValue(x,...)
neutralComponent(x,...)

Arguments

x

An object of psimi25Interaction-class, see example

...

Other parameters to control the identifier returned, not implemented yet

Value

The source database identifier is returned.

Author(s)

Jitao David Zhang <jitao_david.zhang@roche.com>, Tony Chiang <tchiang@ebi.ac.uk>

References

The UniProt database http://www.expasy.uniprot.org/

See Also

psimi25Interaction-class

Examples

xmlDir <- system.file("/extdata/psi25files",package="RpsiXML")

gridxml <- file.path(xmlDir, "biogrid_200804_test.xml.gz")
gridSet <- parsePsimi25Interaction(gridxml, BIOGRID.PSIMI25)

interExp <- interactions(gridSet)[[1]]
bait(interExp)
prey(interExp)

[Package RpsiXML version 2.36.0 Index]