is.valid,RnBDiffMeth-method {RnBeads} | R Documentation |
Validate an RnBDiffMeth object, ie. verify that all differential methylation tables are specified and accounted for
## S4 method for signature 'RnBDiffMeth' is.valid(object, verbose = FALSE)
object |
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verbose |
print more info to the logger |
TRUE iff all differential methylation tables are present and accounted for
Fabian Mueller
library(RnBeads.hg19) data(small.example.object) logger.start(fname=NA) dm1 <- rnb.execute.computeDiffMeth(rnb.set.example,"Sample_Group",c("genes","tiling")) dm2 <- rnb.execute.computeDiffMeth(rnb.set.example,c("Sample_Group","Treatment"),"promoters") dm.join1 <- join.diffMeth(dm1,dm2) #The following joint object is invalid due to missing region type - comparison combinations is.valid(dm.join1) dm3 <- rnb.execute.computeDiffMeth(rnb.set.example,c("Treatment"),c("genes","tiling")) dm.join2 <- join.diffMeth(dm.join1,dm3) #After joining the missing information, the new object is valid is.valid(dm.join2)