getCellTypesFromLolaDb {RnBeads}R Documentation

getCellTypesFromLolaDb

Description

retrieve or guess cell types from a LOLA DB object

Usage

getCellTypesFromLolaDb(lolaDb)

Arguments

lolaDb

LOLA DB object as returned by LOLA::loadRegionDB or loadLolaDbs

Value

character vector with cell types

Author(s)

Fabian Mueller

Examples


# download LOLA DB
lolaDest <- tempfile()
dir.create(lolaDest)
lolaDirs <- downloadLolaDbs(lolaDest, dbs="LOLACore")
lolaDb <- loadLolaDbs(lolaDirs[["hg19"]])
getCellTypesFromLolaDb(lolaDb)


[Package RnBeads version 2.12.2 Index]