getAnnotatedDataFrameAssay {Risa} | R Documentation |
Retrieves an AnnotatedDataFrameAssay.
getAnnotatedDataFrameAssay(isa, assay.filename)
isa |
An object of the |
assay.filename |
An annotated data frame.
Alejandra Gonzalez-Beltran
ISATab-class
, AnnotatedDataFrame
faahkoISAzip <- system.file("extdata","faahKO-metadata.zip", package="Risa") faahkoISA <- readISAtab(zipfile = faahkoISAzip, path = file.path(system.file("extdata", package="Risa"),"faahkoISA"), verbose =TRUE) faahkoADF <- getAnnotatedDataFrameAssay(faahkoISA, faahkoISA@assay.filenames[[1]]) str(faahkoADF) armstrongISAzip <- system.file("extdata","ARMSTRONG-S-3-metadata.zip", package="Risa") armstrongISA <- readISAtab(zipfile = armstrongISAzip, path = file.path(system.file("extdata", package="Risa"),"armstrongISA"), verbose =TRUE) armstrongADF <- getAnnotatedDataFrameAssay(armstrongISA, armstrongISA@assay.filenames[[1]]) str(armstrongADF)