trimSummary {Rfastp} | R Documentation |
generate a data frame of the Fastq trim summary.
trimSummary(json)
json |
the output json of function rfastq. [json] |
a data frame.
Wei Wang
outputPrefix <- tempfile(tmpdir = tempdir()) se_read1 <- system.file("extdata","Fox3_Std_small.fq.gz",package="Rfastp") se_json_report <- rfastp(read1 = se_read1, outputFastq = outputPrefix, thread = 4, adapterSequenceRead1 = 'GTGTCAGTCACTTCCAGCGG') trim_summary <- trimSummary(se_json_report)