Enrich-class {RegEnrich} | R Documentation |
The 'Enrich' object is to store enrichment analysis results by either 'FET' method or 'GSEA' method.
topResult
data frame. The enrichment results that pass thresholds (default threshold is 0.05).
allResult
data frame. The enrichment results by FET or GSEA methods.
gene
character vector indicating the genes used for enrichment analysis.
namedScores
numeric vector, a vector of ranked scores (decendent), the names of the scores are the genes to perform enrichment analysis. Here the scores are p-value of each gene.
type
character indicating enrichment method, either 'FET' or 'GSEA'.