plot.ROTS {ROTS} | R Documentation |
Plots the ROTS objects created with the ROTS package.
## S3 method for class 'ROTS' plot(x, fdr=0.05, type=NULL, labels=FALSE, ...)
x |
A |
fdr |
Selected cutoff for FDR value. |
type |
Type of plot to be created. Options are: 'volcano', 'heatmap', 'ma', 'reproducibility', 'pvalue', 'pca'. |
labels |
Option to print labels for differentially expressed features. |
... |
Other arguments passed to the plot function. |
This function plots the results from a ROTS object using given false discovery rate threshold.
Plots the results from ROTS object.
Fatemeh Seyednasrollah, Tomi Suomi, Laura L. Elo
Maintainer: Tomi Suomi <tomi.suomi@utu.fi>
## ROTS-statistic for the Affymetrix spike-in data. rots.out <- ROTS(data = affySpikeIn, groups = c(rep(0,5), rep(1,5)), B = 100, K = 500 , seed = 1234) ## Plotting of the ROTS results. plot(rots.out, type="volcano")