ModInosine-functions {RNAmodR}R Documentation

Functions for ModInosine

Description

All of the functions of Modifier and the ModifierSet classes are inherited by the ModInosine and ModSetInosine classes.

Check below for the specifically implemented functions.

Usage

## S4 replacement method for signature 'ModInosine'
settings(x) <- value

## S4 method for signature 'ModInosine'
aggregateData(x)

## S4 method for signature 'ModInosine'
findMod(x)

## S4 method for signature 'ModInosine'
getDataTrack(x, name, type, ...)

## S4 method for signature 'ModInosine,GRanges'
plotDataByCoord(x, coord, type = "score", window.size = 15L, ...)

## S4 method for signature 'ModInosine'
plotData(x, name, from = 1L, to = 30L, type = "score", ...)

## S4 method for signature 'ModSetInosine,GRanges'
plotDataByCoord(x, coord, type = "score", window.size = 15L, ...)

## S4 method for signature 'ModSetInosine'
plotData(x, name, from = 1L, to = 30L, type = "score", ...)

Arguments

x

a Modifier or a ModifierSet object. For more details see also the man pages for the functions mentioned below.

value

See settings

coord, name, from, to, type, window.size, ...

See plotData

Details

ModInosine specific arguments for plotData:

Value

Examples

data(msi,package="RNAmodR")
mi <- msi[[1]]
settings(mi)
## Not run: 
aggregate(mi)
modify(mi)

## End(Not run)
getDataTrack(mi, "1", mainScore(mi))

[Package RNAmodR version 1.8.0 Index]