RGSEA-package {RGSEA} | R Documentation |
This is the package for similarity identifucation and classification of transcriptome data
Package: | RGSEA |
Type: | Package |
Version: | 1.0 |
Date: | 2014-04-22 |
License: | GPL(>=3) |
~~ An overview of how to use the package, including the most important functions ~~
Chengcheng Ma Maintainer: tcmcc1986@gmail.com
~~ Literature or other references for background information ~~
Song L, Langfelder P, Horvath S. Random generalized linear model: a highly accurate and interpretable ensemble predictor[J]. BMC bioinformatics, 2013, 14(1): 5. Subramanian A, Tamayo P, Mootha V K, et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles[J]. Proceedings of the National Academy of Sciences of the United States of America, 2005, 102(43): 15545-15550.
if(interactive()) { data(e1) data(e2) RGSEAfix(e1,e2, queryclasses=colnames(e1), refclasses=colnames(e2), random=20000, featurenum=1000, iteration=100)->test }