summarizeBySeq {REDseq} | R Documentation |
Output count/weight summary by sequences with each row representing each sequences
summarizeBySeq(assignedSeqs, by =c("Weight", "SEQid"))
assignedSeqs |
output from assignSeq2REsite |
by |
Weight if sum up the weight for each sequence, SEQid if sum the occurrence of each sequence |
a matrix with SEQid as the first column and total count/weight as the second column
Lihua Julie Zhu
summarizeByRE, assignSeq2REsite
library(REDseq) data(example.assignedREDseq) summarizeBySeq(example.assignedREDseq, by="Weight") summarizeBySeq(example.assignedREDseq,by="SEQid")