PlotPseudoTime {RCSL} | R Documentation |
Infer the pseudo-temporal ordering between the cell types using the distance from a cell type to the predefined starting cell type.
PlotPseudoTime( S, TrueLabel, startPoint, fontSize = 12, dataName = "", sim = TRUE )
S |
the similarity matrix calculated by SimS() function |
TrueLabel |
the real cell types used to indicate the vertical axis |
startPoint |
the posiition of the starting cell in the matrix |
fontSize |
the font size of the plot |
dataName |
the name of the data that will be showed in the plot |
sim |
indicate the input data is simialrity matrix or not |
PstudoTime
PseudoTimePlot ggplot object of the pseudo-temporal ordering of cells
gfData <- GenesFilter(yan) TrueLabel <- ann$cell_type1 res_SimS <- SimS(gfData) PlotPseudoTime(res_SimS$S,TrueLabel,startPoint=1)