summarizeQueryRegions {RCAS} | R Documentation |
This function counts number of query regions that overlap with different types of gene features.
summarizeQueryRegions(queryRegions, txdbFeatures)
queryRegions |
GRanges object imported from a BED file using
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txdbFeatures |
List of GRanges objects - outputs of
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A data frame with two columns where first column holds features and second column holds corresponding counts
data(gff) data(queryRegions) txdbFeatures <- getTxdbFeaturesFromGRanges(gffData = gff) summary <- summarizeQueryRegions(queryRegions = queryRegions, txdbFeatures = txdbFeatures)