thrTable {PoDCall}R Documentation

PoDCall Example Threshold Table

Description

A data.frame that contains the results of running PodCall with the amplitude data files included in the package. For testing and running of examples. See vignette for more detailed description about columns.

Usage

data("thrTable")

Format

A data.frame with 13 columns, which are:

sample_id

Sample ID

thr_target

Threshold channel 1 (target assay)

thr_ctrl

Threshold channel 2 (control assay)

pos_dr_target

Positive droplets target

pos_dr_ctrl

Positive droplets control

tot_droplets

Total droplets

c_target

Concentration target

c_ctrl

Concentration control

c_norm_4Plex

Normalized concentration based on 4Plex control

c_norm_sg

Normalized concentration based on single gene control

q

Parameter Q for calling outliers

target_assay

Target assay

ctrl_assay

Control assay

ref_well

Reference well used to set threshold

Source

In-house cell-line experiment.


[Package PoDCall version 1.2.0 Index]