podcallScatterplot {PoDCall} | R Documentation |
Function that make a scatterplot of amplitude values from one channel of a well with threshold indicated by a horizontal line.
podcallScatterplot(channelData, thr, channel, plotId = NULL)
channelData |
Amplitude values from one channel of a well. |
thr |
The threshold set for |
channel |
The channel the amplitude values belong to. |
plotId |
A character string with title for the plot |
A scatterplot of all droplets from a channel from a well with a line indicating the set threshold.
# Get path to data path <- system.file("extdata", "Amplitudes/", package="PoDCall") # Read in data data <- importAmplitudeData(path) data("thrTable") # Get name of first list element and use as well ID well_id <- names(data)[1] # Set channel to plot channel <- 1 # Get threshold for well_id and channel 1 (see ?thrTable) thr <- thrTable[well_id, "thr_target"] scatterplot <- podcallScatterplot(channelData=data[[well_id]][[channel]], thr, channel)