genAnnotationFiles {PloGO2} | R Documentation |
Given a Excel spreadsheet with multiple tabs, generate a Wego file for each tab using a pre-download DB file.
genAnnotationFiles(fExcelName, colName="Uniprot", DB.name = "pathwayDB.csv", folder="PWFiles",outFolder=tempdir())
fExcelName |
An excel file containing one or multiple tabs of protein IDs. For example, the proteins in each tab come from the same cluster. |
colName |
The column name of the protein ID. |
DB.name |
The database file name, in .csv format. |
folder |
The folder name for saving the generated files. |
outFolder |
The output files folder |
The folder path for generated annotation files.
J. Wu
path <- system.file("files", package = "PloGO2") genAnnotationFiles(fExcelName = file.path(path, "ResultsWGCNA_Input4PloGO2.xlsx"), colName="Uniprot", DB.name = file.path(path, "pathwayDB.csv"))