createVariableDistributionDataSubset {PhyloProfile} | R Documentation |
Create data for additional variable distribution (for a subset data)
createVariableDistributionDataSubset(fullProfileData, distributionData, selectedGenes, selectedTaxa)
fullProfileData |
dataframe contains the full processed profiles (see ?fullProcessedProfile, ?filterProfileData or ?fromInputToProfile) |
distributionData |
dataframe contains the full distribution data (see ?createVariableDistributionData) |
selectedGenes |
list of genes of interest. Default = "all". |
selectedTaxa |
list of taxa of interest Default = "all". |
A dataframe for analysing the distribution of the additional variable(s) for a subset of genes and/or taxa containing the protein (ortholog) IDs and the values of their variables (var1 and var2).
Vinh Tran tran@bio.uni-frankfurt.de
parseInfoProfile
,
createVariableDistributionData
,
fullProcessedProfile
, mainLongRaw
data("fullProcessedProfile", package="PhyloProfile") data("mainLongRaw", package="PhyloProfile") distributionData <- createVariableDistributionData( mainLongRaw, c(0, 1), c(0.5, 1) ) selectedGenes <- "100136at6656" selectedTaxa <- c("Mammalia", "Saccharomycetes", "Insecta") createVariableDistributionDataSubset( fullProcessedProfile, distributionData, selectedGenes, selectedTaxa )