getFastaFromFasInput {PhyloProfile}R Documentation

Get fasta sequences from main input file in multi-fasta format

Description

Get fasta sequences from main input file in multi-fasta format

Usage

getFastaFromFasInput(seqIDs = NULL, file = NULL)

Arguments

seqIDs

list of sequences IDs. Set seqIDs = "all" if you want to get all fasta sequences from the input file.

file

raw phylogenetic profile input file in multi-fasta format.

Value

A dataframe with one column contains sequences in fasta format.

Author(s)

Vinh Tran tran@bio.uni-frankfurt.de

Examples

file <- system.file(
    "extdata", "test.main.fasta",
    package = "PhyloProfile", mustWork = TRUE
)
getFastaFromFasInput("all", file)

[Package PhyloProfile version 1.8.6 Index]