PharmacoSet2 {PharmacoGx} | R Documentation |
New implementation of the CoreSet constructor to support MAE and TRE. This
constructor will be swapped with the original CoreSet
constructor as
part of an overhaul of the CoreSet class structure.
PharmacoSet2( name = "emptySet", treatment = data.frame(), sample = data.frame(), molecularProfiles = MultiAssayExperiment(), treatmentResponse = TreatmentResponseExperiment(), curation = list(sample = data.frame(), treatment = data.frame(), tissue = data.frame()) )
name |
A |
treatment |
A |
sample |
A |
molecularProfiles |
A |
treatmentResponse |
A |
curation |
This class requires an additional curation item, tissue, which maps from published to standardized tissue idenifiers. |
A CoreSet
object storing standardized and curated treatment
response and multiomic profile data associated with a given publication.
data(CCLEsmall) CCLEsmall