summarizeSensitivityProfiles,PharmacoSet-method {PharmacoGx} | R Documentation |
This function creates a table with cell lines as rows and drugs as columns, summarising the drug senstitivity data of a PharmacoSet into drug-cell line pairs
## S4 method for signature 'PharmacoSet' summarizeSensitivityProfiles( object, sensitivity.measure = "auc_recomputed", cell.lines, drugs, summary.stat = c("mean", "median", "first", "last", "max", "min"), fill.missing = TRUE, verbose = TRUE )
object |
PharmacoSet The PharmacoSet from which to extract the data |
sensitivity.measure |
|
cell.lines |
|
drugs |
|
summary.stat |
|
fill.missing |
|
verbose |
Should the function print progress messages? |
matrix A matrix with cell lines going down the rows, drugs across the columns, with the selected sensitivity statistic for each pair.
data(GDSCsmall) GDSCauc <- summarizeSensitivityProfiles(GDSCsmall, sensitivity.measure='auc_published')