cloverScore {PWMEnrich}R Documentation

Calculate the Clover score using the recursive formula from Frith et al

Description

Calculate the Clover score using the recursive formula from Frith et al

Usage

cloverScore(scores, lr3 = FALSE, verbose = FALSE)

Arguments

scores

a matrix of average odds scores, where columns are motifs, and rows sequences

lr3

if to return a matrix of LR3 scores, where columns correpond to motifs, and rows to subset sizes

verbose

if to produce verbose output of progress

Value

the LR4 score, which is the mean of LR3 scores over subset sizes


[Package PWMEnrich version 4.30.0 Index]