motifScoresBigMemory {PWMEnrich} | R Documentation |
The parameters and functionality are the same as motifScores
. Please refer to documentation of this function
for detailed explanation of functionality.
motifScoresBigMemory( sequences, motifs, raw.scores = FALSE, verbose = TRUE, cutoff = NULL, seq.all = NULL )
sequences |
set of input sequences |
motifs |
set of input PWMs or PFMs |
raw.scores |
if to return scores for each base-pair |
verbose |
if to produce verbose output |
cutoff |
the cutoff for calling binding sites (in base 2 log). |
seq.all |
already concatenated sequences if already available (used to internally speed up things) |
This function is not meant to be called directly, but is indirectly called by motifScores() once a global parameters useBigMemory is set.