validateModel,ClinicalModel,SurvivalExperiment-method {PDATK} | R Documentation |
Validate a ClinicalModel object with a single SurvivalExperiment object.
## S4 method for signature 'ClinicalModel,SurvivalExperiment' validateModel(model, valData)
model |
A |
valData |
A |
The ClinicalModel
with the validation statistics in the
validationStats
slot and the validation data in the validationData
slot.
data(sampleClinicalModel) data(sampleCohortList) # Set parallelization settings BiocParallel::register(BiocParallel::SerialParam()) # Train Model trainedClinicalModel <- trainModel(sampleClinicalModel) # Make predictions clinicalPredCohortList <- predictClasses(sampleCohortList[c('PCSI', 'TCGA')], model=trainedClinicalModel) # Validate model validatedClinicalModel <- validateModel(trainedClinicalModel, valData=clinicalPredCohortList)