ClinicalModel {PDATK} | R Documentation |
Constructor for the ClinicalModel Class
Description
Constructor for the ClinicalModel Class
Usage
ClinicalModel(trainData, formula, minDaysSurvived = 365, ..., randomSeed)
Arguments
trainData |
A SurvivalExperiment or CohortList object to construct
a clinical model using
|
formula |
A formula object or a character vector coercible to one.
All columns specified in the formula must be in the colData slot of the
all SurvivalExperiment s in trainData.
|
minDaysSurvived |
An integer specifying the minimum number of days
required to be 'good' prognosis. Default is 365.
|
... |
Force all subsequent parameters to be named. Not used.
|
randomSeed |
An integer randomSeed that was used to train the model.
Users should specify this when initializing a model to ensure
reproducibilty.
|
Value
A ClinicalModel
object.
Examples
data(sampleICGCmicro)
set.seed(1987)
clinicalModel <- ClinicalModel(sampleICGCmicro,
formula='prognosis ~ sex + age + T + N + M + grade', randomSeed=1987)
[Package
PDATK version 1.2.0
Index]