preppi_filter {OmnipathR} | R Documentation |
Filter PrePPI interactions by scores
preppi_filter(data, ..., .op = "&")
data |
A data frame of PrePPI interactions as provided by
|
... |
Minimum values for the scores. The available scores are:
str, protpep, str_max, red, ort, phy, coexp, go, total, exp and final.
See more about the scores at |
.op |
The operator to combine the scores with: either |
The input data frame (tibble) filtered by the score thresholds.
preppi <- preppi_download() preppi_filtered <- preppi_filter(preppi, red = 10, str = 4.5, ort = 1) nrow(preppi_filtered) # [1] 8443