nichenet_signaling_network_pathwaycommons {OmnipathR} | R Documentation |
Builds signaling network prior knowledge for NicheNet using PathwayCommons.
nichenet_signaling_network_pathwaycommons( interaction_types = c("catalysis-precedes", "controls-phosphorylation-of", "controls-state-change-of", "controls-transport-of", "in-complex-with", "interacts-with"), ... )
interaction_types |
Character vector with PathwayCommons interaction types. Please refer to the default value and the PathwayCommons webpage. |
... |
Ignored. |
A network data frame (tibble) with signaling interactions suitable for use with NicheNet.
# use only the "controls-transport-of" interactions: pc_signaling_network <- nichenet_signaling_network_pathwaycommons( interaction_types = 'controls-transport-of' )