kegg_pathway_annotations {OmnipathR} | R Documentation |
Downloads all KEGG pathways and creates a table of protein-pathway annotations.
kegg_pathway_annotations(pathways = NULL)
pathways |
A table of KEGG pathways as produced by |
A data frame (tibble) with UniProt IDs and pathway names.
kegg_pw_annot <- kegg_pathway_annotations() kegg_pw_annot # # A tibble: 7,341 x 4 # uniprot genesymbol pathway pathway_id # <chr> <chr> <chr> <chr> # 1 Q03113 GNA12 MAPK signaling pathway hsa04010 # 2 Q9Y4G8 RAPGEF2 MAPK signaling pathway hsa04010 # 3 Q13972 RASGRF1 MAPK signaling pathway hsa04010 # 4 O95267 RASGRP1 MAPK signaling pathway hsa04010 # 5 P62834 RAP1A MAPK signaling pathway hsa04010 # # . with 7,336 more rows