nichenet_build_model {OmnipathR} | R Documentation |
Construct a NicheNet ligand-target model
nichenet_build_model(optimization_results, networks, use_weights = TRUE)
optimization_results |
The outcome of NicheNet parameter optimization
as produced by |
networks |
A list with NicheNet format signaling, ligand-receptor
and gene regulatory networks as produced by
|
use_weights |
Logical: whether to use the optimized weights. |
A named list with two elements: 'weighted_networks' and 'optimized_parameters'.
expression <- nichenet_expression_data() networks <- nichenet_networks() optimization_results <- nichenet_optimization(networks, expression) nichenet_model <- nichenet_build_model(optimization_results, networks)