harmonizome_download {OmnipathR} | R Documentation |
Downloads a single network dataset from Harmonizome https://maayanlab.cloud/Harmonizome.
harmonizome_download(dataset)
dataset |
The dataset part of the URL. Please refer to the download section of the Harmonizome webpage. |
Data frame (tibble) with interactions.
harmonizome_data <- harmonizome_download('phosphositeplus') harmonizome_data # # A tibble: 6,013 x 7 # source source_desc source_id target target_desc target_id weight # <chr> <chr> <dbl> <chr> <chr> <dbl> <dbl> # 1 TP53 na 7157 STK17A na 9263 1 # 2 TP53 na 7157 TP53RK na 112858 1 # 3 TP53 na 7157 SMG1 na 23049 1 # 4 UPF1 na 5976 SMG1 na 23049 1 # # . with 6,003 more rows