nichenet_lr_network {OmnipathR} | R Documentation |
Builds ligand-receptor network prior knowledge for NicheNet using multiple resources.
nichenet_lr_network( omnipath = list(), guide2pharma = list(), ramilowski = list(), only_omnipath = FALSE, quality_filter_param = list() )
omnipath |
List with paramaters to be passed to
|
guide2pharma |
List with paramaters to be passed to
|
ramilowski |
List with paramaters to be passed to
|
only_omnipath |
Logical: a shortcut to use only OmniPath as network resource. |
quality_filter_param |
Arguments for |
A network data frame (tibble) with ligand-receptor interactions suitable for use with NicheNet.
# load everything with the default parameters: lr_network <- nichenet_lr_network() # don't use Ramilowski: lr_network <- nichenet_lr_network(ramilowski = NULL) # use only OmniPath: lr_network_omnipath <- nichenet_lr_network(only_omnipath = TRUE)