nichenet_gr_network_harmonizome {OmnipathR} | R Documentation |
Builds gene regulatory network prior knowledge for NicheNet using Harmonizome
nichenet_gr_network_harmonizome( datasets = c("cheappi", "encodetfppi", "jasparpwm", "transfac", "transfacpwm", "motifmap", "geotf", "geokinase", "geogene"), ... )
datasets |
The datasets to use. For possible values please refer to default value and the Harmonizome webpage. |
... |
Ignored. |
Data frame with gene regulatory interactions in NicheNet format.
# use only JASPAR and TRANSFAC: hz_gr_network <- nichenet_gr_network_harmonizome( datasets = c('jasparpwm', 'transfac', 'transfacpwm') )