annotation_categories {OmnipathR} | R Documentation |
A full list of annotation resources, keys and values.
annotation_categories()
A data frame with resource names, annotation key labels and for each key all possible values.
annot_cat <- annotation_categories() annot_cat # # A tibble: 46,307 x 3 # source label value # <chr> <chr> <chr> # 1 connectomeDB2020 role ligand # 2 connectomeDB2020 role receptor # 3 connectomeDB2020 location ECM # 4 connectomeDB2020 location plasma membrane # 5 connectomeDB2020 location secreted # 6 KEGG-PC pathway Alanine, aspartate and glutamate metabolism # 7 KEGG-PC pathway Amino sugar and nucleotide sugar metabolism # 8 KEGG-PC pathway Aminoacyl-tRNA biosynthesis # 9 KEGG-PC pathway Arachidonic acid metabolism # 10 KEGG-PC pathway Arginine and proline metabolism