formatTopGO {OmaDB} | R Documentation |
The function to create a list of GO annotations that is compatible with topGO from protein objects in roma
formatTopGO(geneList, format)
geneList |
the list of OmaDB protein objects or a dataframe of ontologies to be included in the analysis - this is where the GO annotations are extracted from. |
format |
format for the data to be returned in - either 'GO2geneID' or 'geneID2GO' |
a list containing the GO2geneID or geneID2GO information
geneList = list(getProtein(id='YEAST01'),getProtein(id='YEAST03')) annotations = formatTopGO(geneList,format='geneID2GO')