te.table {ORFik} | R Documentation |
Creates a data.table with 6 columns, column names are:
variable, rfp_log2, rna_log2, rna_log10, TE_log2, id
te.table(df.rfp, df.rna, filter.rfp = 1, filter.rna = 1, collapse = FALSE)
df.rfp |
a |
df.rna |
a |
filter.rfp |
numeric, default 1. What is the minimum fpkm value? |
filter.rna |
numeric, default 1. What is the minimum fpkm value? |
collapse |
a logical/character (default FALSE), if TRUE all samples within the group SAMPLE will be collapsed to one. If "all", all groups will be merged into 1 column called merged_all. Collapse is defined as rowSum(elements_per_group) / ncol(elements_per_group) |
a data.table with 6 columns
Other DifferentialExpression:
DEG.plot.static()
,
DTEG.analysis()
,
DTEG.plot()
,
te_rna.plot()
df <- ORFik.template.experiment() df.rfp <- df[df$libtype == "RFP",] df.rna <- df[df$libtype == "RNA",] #te.table(df.rfp, df.rna)