loadTxdb {ORFik} | R Documentation |
Useful to allow fast TxDb loader like .db
loadTxdb(txdb, chrStyle = NULL)
txdb |
a TxDb file, a path to one of: (.gtf ,.gff, .gff2, .gff2, .db or .sqlite) or an ORFik experiment |
chrStyle |
a GRanges object, TxDb, FaFile,
or a |
a TxDb object
library(GenomicFeatures) # Get the gtf txdb file txdbFile <- system.file("extdata", "hg19_knownGene_sample.sqlite", package = "GenomicFeatures") txdb <- loadDb(txdbFile)