trimming.table {ORFik} | R Documentation |
From fastp runs in ORFik alignment process
trimming.table(trim_folder)
trim_folder |
folder of trimmed files, only reads fastp .json files |
a data.table with 6 columns, raw_library (names of library), raw_reads (numeric, number of raw reads), trim_reads (numeric, number of trimmed reads), raw_mean_length (numeric, raw mean read length), trim_mean_length (numeric, trim mean read length).
# Location of fastp trimmed .json files trimmed_folder <- "path/to/libraries/trim/" #trimming.table(trimmed_folder)