list.genomes {ORFik}R Documentation

List genomes created with ORFik

Description

Given the reference.folder, list all valid references.

Usage

list.genomes(reference.folder = ORFik::config()["ref"])

Arguments

reference.folder

character path, default: ORFik::config()["ref"].

Value

a data.table with 4 columns:
- character (name of folder)
- logical (does it have a gtf) - logical (does it have a fasta genome) - logical (does it have a STAR index)

Examples

## Run with default config path
#list.genomes()
## Run with custom config path
list.genomes(tempdir())

[Package ORFik version 1.14.7 Index]