read.experiment {ORFik} | R Documentation |
experiment
Read in runs / samples from an experiment as a single R object.
To read an ORFik experiment, you must of course make one first.
See create.experiment
The file must be csv and be a valid ORFik experiment
read.experiment( file, in.dir = "~/Bio_data/ORFik_experiments/", validate = TRUE )
file |
relative path to a ORFik experiment. That is a .csv file following
ORFik experiment style ("," as seperator).
, or a template data.frame from |
in.dir |
Directory to load experiment csv file from, default:
"~/Bio_data/ORFik_experiments/" |
validate |
logical, default TRUE. Abort if any library files does not exist. Do not set this to FALSE, unless you know what you are doing! |
an ORFik experiment
Other ORFik_experiment:
ORFik.template.experiment.zf()
,
ORFik.template.experiment()
,
bamVarName()
,
create.experiment()
,
experiment-class
,
filepath()
,
libraryTypes()
,
organism,experiment-method
,
outputLibs()
,
save.experiment()
,
validateExperiments()
# From file ## Not run: # Read from file df <- read.experiment(filepath) # <- valid ORFik .csv file ## End(Not run) ## Read from (create.experiment() template) df <- ORFik.template.experiment() ## To save it, do: # save.experiment(df, file = "path/to/save/experiment") ## You can then do: # read.experiment("path/to/save/experiment") # or (identical): # read.experiment("experiment", in.dir = "path/to/save/")