chart_correlation {OMICsPCA} | R Documentation |
This function creates pairwise correlation plots and tables; scatter plots and histograms on selected groups. The type of results should be passed through the argument 'choice'. This is a wrapper on various functions and thus can take additional and non-conflicting arguments specific to them.
chart_correlation(name, Assay, groups, choice, groupinfo = NULL, ...)
name |
Name of the "MultiAssayExperiment" object containing the assay data |
Assay |
Name of an assay |
groups |
Name of all or subset of groups |
choice |
"table" = correlation table "scatter" = scatterplot of each pair of columns/variables of selected groups "hist" = histogram of each column/variables "all" = all of 1,2,3 together |
groupinfo |
output of create_group or similar object. |
... |
additional arguments for base functions "chart.Correlation" and "pairs" |
Displays various plots and tables as per the combination of input arguments
Subhadeep Das <subhadeep1024@gmail.com>
chart_correlation(name = multi_assay, Assay = "H2az", groupinfo = groupinfo_ext, groups = "WE", choice = "table")