performNormalizations {NormalyzerDE} | R Documentation |
Main function for executing normalizations
performNormalizations( nr, forceAll = FALSE, rtNorm = FALSE, rtStepSizeMinutes = 1, rtWindowMinCount = 100, rtWindowShifts = 1, rtWindowMergeMethod = "median", noLogTransform = FALSE, quiet = FALSE ) ## S4 method for signature 'NormalyzerResults' performNormalizations( nr, forceAll = FALSE, rtNorm = FALSE, rtStepSizeMinutes = 1, rtWindowMinCount = 100, rtWindowShifts = 1, rtWindowMergeMethod = "median", noLogTransform = FALSE, quiet = FALSE )
nr |
Normalyzer results object. |
forceAll |
Ignore dataset size limits and run all normalizations (only meant for testing purposes) |
rtNorm |
Perform retention time based normalizations |
rtStepSizeMinutes |
Retention time normalization window size. |
rtWindowMinCount |
Minimum number of datapoints in each retention-time segment. |
rtWindowShifts |
Number of layered retention time normalized windows. |
rtWindowMergeMethod |
Merge approach for layered retention time windows. |
noLogTransform |
Prevent log-transforming input |
quiet |
Don't show regular output messages |
nr NormalyzerDE results object