read_merge_rcc {NanoTube} | R Documentation |
Read in multiple .rcc files named in the fileList and merge the expression data. This step is conducted within processNanostringData.
read_merge_rcc(fileList, includeQC = FALSE, logfile = "")
fileList |
a character vector of .rcc file names |
includeQC |
include merged QC data (from the "Lane Attributes" part of file) in the output? Default FALSE |
logfile |
a filename for the logfile (optional). If blank, will print warnings to screen. |
A list object including:
exprs |
The expression matrix |
dict |
The gene dictionary |
qc |
QC metrics included in the .rcc files, if includeQC == TRUE |
example_data <- system.file("extdata", "GSE117751_RAW", package = "NanoTube") dat <- read_merge_rcc(list.files(example_data, full.names = TRUE))