makeNanoStringSetFromEset {NanoTube} | R Documentation |
Convert ExpressionSet from processNanoStringData to a NanoStringSet for use with the NanoStringDiff package.
makeNanoStringSetFromEset(eset, designs = NULL)
eset |
NanoString data ExpressionSet, from processNanostringData |
designs |
Design matrix. If NULL, will look for "groups" column in pData(eset). |
A NanoStringSet for NanoStringDiff
# Example data example_data <- system.file("extdata", "GSE117751_RAW", package = "NanoTube") sample_data <- system.file("extdata", "GSE117751_sample_data.csv", package = "NanoTube") # Load data without normalization dat <- processNanostringData(nsFiles = example_data, sampleTab = sample_data, groupCol = "Sample_Diagnosis", normalization = "none") # Convert to NanoStringSet dat.ns <- makeNanoStringSetFromEset(dat)