create_tabix_file {NanoMethViz} | R Documentation |
Create a tabix file using methylation calls
create_tabix_file( input_files, output_file, samples = extract_file_names(input_files), verbose = TRUE )
input_files |
the files to convert |
output_file |
the output file to write results to (must end in .bgz) |
samples |
the names of samples corresponding to each file |
verbose |
TRUE if progress messages are to be printed |
invisibly returns the output file path, creates a tabix file (.bgz) and its index (.bgz.tbi)
methy_calls <- system.file(package = "NanoMethViz", c("sample1_nanopolish.tsv.gz", "sample2_nanopolish.tsv.gz")) temp_file <- paste0(tempfile(), ".tsv.bgz") create_tabix_file(methy_calls, temp_file)