plot_region_heatmap {NanoMethViz} | R Documentation |
Plot region methylation heatmap
plot_region_heatmap(x, chr, start, end, ...) ## S4 method for signature 'NanoMethResult,character,numeric,numeric' plot_region_heatmap( x, chr, start, end, pos_style = c("to_scale", "compact"), window_prop = 0.3 ) ## S4 method for signature 'NanoMethResult,factor,numeric,numeric' plot_region_heatmap( x, chr, start, end, pos_style = c("to_scale", "compact"), window_prop = 0.3 )
x |
the NanoMethResult object. |
chr |
the chromosome to plot. |
start |
the start of the plotting region. |
end |
the end of the plotting region. |
... |
additional arguments. |
pos_style |
the style for plotting the base positions along the x-axis. Defaults to "to_scale", plotting (potentially) overlapping squares along the genomic position to scale. The "compact" options plots only the positions with measured modification. |
window_prop |
the size of flanking region to plot. Can be a vector of two values for left and right window size. Values indicate proportion of gene length. |
a ggplot object of the heatmap.
a ggplot plot containing the heatmap.
nmr <- load_example_nanomethresult() plot_region_heatmap(nmr, "chr7", 6703892, 6730431) nmr <- load_example_nanomethresult() plot_region_heatmap(nmr, "chr7", 6703892, 6730431)