plotVolcano {NBSplice} | R Documentation |
plotVolcano
returns a generalized volcano plot where the x-axis
represents the difference between isoform's relative expression in the
contrasted conditions. Isoforms are colored according to the differential
splicing status of the gene where they come from.
plotVolcano(myNBRes, adjusted = TRUE, p.value = 0.05) ## S4 method for signature 'NBSpliceRes' plotVolcano(myNBRes, adjusted = TRUE, p.value = 0.05)
myNBRes |
NBSpliceRes class object. |
adjusted |
Logical indicating if adjusted p values should be used. |
p.value |
Numeric value between 0 and 1 giving the required family-wise error rate or false discovery rate. |
A ggplot object.
see full example in NBSpliceRes-class
Gabriela A. Merino merino.gabriela33@gmail.com and Elmer A. Fernandez efernandez@bdmg.com.ar
Other NBSpliceRes: GetDSGenes
,
GetDSResults
, GetGeneResults
,
NBSpliceRes-class
,
NBSpliceRes-initialize
,
NBSpliceRes
, myDSResults
,
plotGeneResults
,
plotRatiosDisp
data(myDSResults, package="NBSplice") g<-plotVolcano(myDSResults) if(interactive()){ g }