MinDistGRanges {MinimumDistance}R Documentation

Constructor for MinDistGRanges class

Description

The MinDistGRanges class contains the segmentation of the father, mother, offspring, and the minimum distance for each possible parent-offspring trio. For the parents, the segmentation results are expected to be in GRanges format. To accomodate multiple-offspring families, both the offspring segments and minimum distance segments should be of class GRangesList where the length of the list corresponds to the number of offspring.

Usage

MinDistGRanges(
  mindist = GRangesList(),
  offspring = GRangesList(),
  father = GRanges(),
  mother = GRanges(),
  pedigree = ParentOffspring()
)

Arguments

mindist

a GRangesList object

offspring

a GRangesList object

father

a GRanges object

mother

a GRanges object

pedigree

a ParentOffspring object

Examples

MinDistGRanges()

[Package MinimumDistance version 1.38.0 Index]