get_mean_median {MicrobiotaProcess} | R Documentation |
get the mean and median of specific feature.
get_mean_median(datameta, feature, subclass)
datameta |
data.frame, nrow sample * ncol feature + factor. |
feature |
character vector, the feature contained in datameta. |
subclass |
character, factor name. |
featureMeanMedian object, contained the abundance of feature, and the mean and median of feature by subclass.
Shuangbin Xu
## Not run: data(hmp_aerobiosis_small) head(sampleda) featureda <- merge(featureda, sampleda, by=0) rownames(featureda) <- as.vector(featureda$Row.names) featureda$Row.names <- NULL feameamed <- get_mean_median(datameta=featureda, feature="p__Actinobacteria", subclass="body_site") fplot <- ggdifftaxbar(feameamed, featurename="p__Actinobacteria", classgroup="oxygen_availability", subclass="body_site") ## End(Not run)