mp_import_qiime {MicrobiotaProcess} | R Documentation |
The function was designed to import the output of qiime and convert them to MPSE class.
mp_import_qiime( otufilename, mapfilename = NULL, otutree = NULL, refseq = NULL, ... )
otufilename |
character, the file contained otu table, the ouput of qiime. |
mapfilename |
character, the file contained sample information, the tsv format, default is NULL. |
otutree |
treedata, phylo or character, the file contained reference sequences, or treedata object, which is the result parsed by functions of treeio, default is NULL. |
refseq |
XStringSet or character, the file contained the representation sequence file or XStringSet class to store the representation sequence, default is NULL. |
..., |
additional parameters. |
MPSE-class.
Shuangbin Xu