Preprocess_CancerSite_Methylation27k {MethylMix} | R Documentation |
Internal. Pre-processes DNA methylation data from TCGA from Illymina 27k arrays.
Preprocess_CancerSite_Methylation27k(CancerSite, METdirectory, MissingValueThreshold = 0.2)
CancerSite |
character of length 1 with TCGA cancer code. |
METdirectory |
character with directory where a folder for downloaded files will be created. Can be the object returned by the Download_DNAmethylation function. |
MissingValueThreshold |
threshold for removing samples or genes with missing values. |
List with pre processed methylation data for cancer and normal samples.