getTree {MesKit}R Documentation

getTree

Description

getTree

Usage

getTree(object)

## S4 method for signature 'phyloTree'
getTree(object)

Arguments

object

An object of phyloTree

Value

Tree object of phyloTree

Examples

maf.File <- system.file("extdata/", "CRC_HZ.maf", package = "MesKit")
clin.File <- system.file("extdata/", "CRC_HZ.clin.txt", package = "MesKit")
ccf.File <- system.file("extdata/", "CRC_HZ.ccf.tsv", package = "MesKit")
maf <- readMaf(mafFile=maf.File, clinicalFile = clin.File, ccfFile=ccf.File, refBuild="hg19")
phyloTree <- getPhyloTree(maf)
getTree(phyloTree$V402)

[Package MesKit version 1.4.0 Index]