.makeConditionPlot {MSstats} | R Documentation |
Make condition plot
.makeConditionPlot( input, scale, single_protein, y.limdown, y.limup, x.axis.size, y.axis.size, text.size, text.angle, legend.size, dot.size.condition, yaxis.name )
input |
data.table |
scale |
for "ConditionPlot" only, FALSE(default) means each conditional level is not scaled at x-axis according to its actual value (equal space at x-axis). TRUE means each conditional level is scaled at x-axis according to its actual value (unequal space at x-axis). |
single_protein |
data.table |
x.axis.size |
size of x-axis labeling for "Run" in Profile Plot and QC Plot, and "Condition" in Condition Plot. Default is 10. |
y.axis.size |
size of y-axis labels. Default is 10. |
text.size |
size of labels represented each condition at the top of graph in Profile Plot and QC plot. Default is 4. |
text.angle |
angle of labels represented each condition at the top of graph in Profile Plot and QC plot or x-axis labeling in Condition plot. Default is 0. |
legend.size |
size of feature legend (transition-level or peptide-level) above graph in Profile Plot. Default is 7. |
dot.size.condition |
size of dots in condition plot. Default is 3. |