.cleanRawPhilosopher {MSstatsConvert}R Documentation

Clean raw Philosopher files

Description

Clean raw Philosopher files

Usage

.cleanRawPhilosopher(
  msstats_object,
  protein_id_col,
  peptide_id_col,
  channels,
  remove_shared_peptides
)

Arguments

msstats_object

object of class MSstatsPhilosopherFiles

protein_id_col

character name of a column that identifies proteins

peptide_id_col

character name of a column that identifies peptides

remove_shared_peptides

logical, if TRUE, shared peptides will be removed based on the IsUnique column from Philosopher output

channel

character vector of channel labels

Value

data.table


[Package MSstatsConvert version 1.4.1 Index]