.cleanRawPhilosopher {MSstatsConvert} | R Documentation |
Clean raw Philosopher files
.cleanRawPhilosopher( msstats_object, protein_id_col, peptide_id_col, channels, remove_shared_peptides )
msstats_object |
object of class MSstatsPhilosopherFiles |
protein_id_col |
character name of a column that identifies proteins |
peptide_id_col |
character name of a column that identifies peptides |
remove_shared_peptides |
logical, if TRUE, shared peptides will be removed based on the IsUnique column from Philosopher output |
channel |
character vector of channel labels |
data.table