getMSGFpar {MSGFplus} | R Documentation |
The string representation is defined as the arguments that should get appended to the call when running MSGF+ in the terminal/command prompt
getMSGFpar(object)
object |
An msgfPar object or a related object |
A string that can be appended to a system()
call to specify
the parameters for the MSGF+ analysis
parameters <- msgfPar( database=system.file(package='MSGFplus', 'extdata', 'milk-proteins.fasta'), tolerance='20 ppm', instrument='TOF', enzyme='Lys-C' ) getMSGFpar(parameters)