MPFE-package {MPFE} | R Documentation |
Estimate distribution of methylation patterns from a table of counts from a bisulphite sequencing experiment given a non-conversion rate and sequencing error rate.
Package: | MPFE |
Type: | Package |
License: | GPL(>=3) |
The main component of this package is the function estimatePatterns
,
which reads a table of read counts of bisulphite sequencing data for a given
amplicon and generates a table and plot of the estimated distribution over
methylation patterns.
Peijie Lin, Sylvain Foret, Conrad Burden
Maintainer: conrad.burden@anu.edu.au
data(patternsExample) estimates <- estimatePatterns(patternsExample, epsilon=0.02, eta=0.01) estimates plotPatterns(estimates[[2]])