getCoverage {MOMA} | R Documentation |
Get coverage of interactions
getCoverage( MomaObject, cMR.ranking, viper.samples, topN = 100, mutation.filter = NULL, verbose = FALSE )
MomaObject |
A numeric vector with cluster membership, names are samples |
cMR.ranking |
A vector entrez IDs, in order |
viper.samples |
Calculate the genomic coverage only for these sample |
topN |
Compute coverage for only the top -N- Master Regulators |
mutation.filter |
Retain only mutation events in this (positive) list |
A list of lists, indexed by sample name, with coverage statistics for each sample