associateEvents {MOMA} | R Documentation |
Requires pre-computed VIPER scores and a binary events matrix. Will use only samples in both event and VIPER matrices.
associateEvents( vipermat, events.mat, min.events = NA, whitelist = NA, event.type = c("Amplifications", "Deletions", "Mutations", "Fusions", NA), verbose )
vipermat |
Pre-computed VIPER scores with samples as columns and proteins as rows |
events.mat |
Binary 0/1 events matrix with samples as columns and genes or events as rows |
min.events |
Only compute enrichment if the number of samples with these events is GTE to this |
whitelist |
Only compute associations for events in this list |
event.type |
Name of the event type being analyzed |
verbose |
whether to print extra progress statements |
A matrix of aREA scores, dimensions are nrow(events.mat) x nrow(vipermat)