pathwayDiggitIntersect {MOMA}R Documentation

Combine DIGGIT inferences with pathway knowledge

Description

Combine DIGGIT inferences with pathway knowledge

Usage

pathwayDiggitIntersect(diggit.int, pathway, pos.nes.only = TRUE, cores = 1)

Arguments

diggit.int

List of interactions between MRs - Genomic events, inferred by DIGGIT

pathway

- a list indexed by TF/MR entrez ID, contains the named vector of p-values for interactions

pos.nes.only

Only use positive associations between MR activity and presence of events (default = True)

cores

Number of cores to use if parallel is selected

Value

numeric vector, zscores for each TF/MR


[Package MOMA version 1.6.0 Index]