OmitCommonEssential {MAGeCKFlute} | R Documentation |
Omit common essential genes based on depmap data
OmitCommonEssential(dd, symbol = "id", lineages = "All", dependency = -0.5)
dd |
A data frame. |
symbol |
A character, specifying the column name of gene symbols in the data frame. |
lineages |
A character vector, specifying the lineages used for common essential gene selection. |
dependency |
A numeric, specifying the threshold for common essential gene selection. |
A data frame.
Wubing Zhang
file1 = file.path(system.file("extdata", package = "MAGeCKFlute"), "testdata/rra.gene_summary.txt") gdata = ReadRRA(file1) dim(gdata) ## Not run: rra.omit = OmitCommonEssential(gdata) dim(rra.omit) ## End(Not run)