IncorporateDepmap {MAGeCKFlute} | R Documentation |
Incorporate Depmap screen into analysis
IncorporateDepmap( dd, symbol = "id", cell_lines = NA, lineages = "All", na.rm = FALSE )
dd |
A data frame. |
symbol |
A character, specifying the column name of gene symbols in the data frame. |
cell_lines |
A character vector, specifying the cell lines in Depmap to be considered. |
lineages |
A character vector, specifying the lineages in Depmap to be considered. |
na.rm |
Boolean, indicating whether removing NAs from the results. |
A data frame with Depmap column attached.
Wubing Zhang
file1 = file.path(system.file("extdata", package = "MAGeCKFlute"), "testdata/rra.gene_summary.txt") gdata = ReadRRA(file1) head(gdata) ## Not run: gdata = IncorporateDepmap(gdata) head(gdata) ## End(Not run)