keggerize_edges {KEGGlincs} | R Documentation |
For a specific pathway entity(gene), search KEGG databases to see if it has any other documented relationships in KEGG. expand_KEGG_edges
keggerize_edges(entry_accession, KGML, KEGG_mappings, edges)
entry_accession |
The Accession # of the pathway entity to 'keggerize' |
KGML |
The KGML file of the current pathway |
KEGG_mappings |
KEGG mappings for the current pathway |
edges |
The expanded edges for the current pathway |
A modified expanded edges data frame with additional rows for new entries
## Not run: KGML <- get_KGML("hsa04150") KEGG_mappings <- expand_KEGG_mappings(KGML) edges <- expand_KEGG_edges(KGML, KEGG_mappings) entry_accession <- "2475" mtor_plus_mtor <- keggerize_edges(entry_accession = entry_accession, KGML = KGML,KEGG_mappings = KEGG_mappings, edges = edges) ## End(Not run)