expand_KEGG_edges {KEGGlincs} | R Documentation |
Extract relationship information from KGML object and re-map based on normalized node information
expand_KEGG_edges(KGML_file, KEGG_mappings)
KGML_file |
An object of formal class KEGGPathway |
KEGG_mappings |
The data.frame object generated by the function expand_KEGG_mappings |
A dataframe object with unique entry information for all edges documented in the KEGG pathway. Note that each row has a unique combination of values for (entry1, entry2, entry1symbol, entry2symbol).
p53_KGML <- get_KGML("hsa04115") p53_KEGG_mappings <- expand_KEGG_mappings(p53_KGML, FALSE) p53_edges <- expand_KEGG_edges(p53_KGML, p53_KEGG_mappings)