findCorFromLoops {InTAD}R Documentation

Function to perfrom correlation analysis via loops.

Description

This function combines genes and signals using obtained loop connections.

Usage

findCorFromLoops(object, method = "pearson", adj.pval = FALSE)

Arguments

object

InTADSig object with signals and genes combined via loops

method

Correlation method: "pearson" (default), "kendall", "spearman"

adj.pval

Perform p-value adjsutment and include q-values in result

Value

A table with correlation values for signal-gene pairs including correlation p-value and euclidian distance.


[Package InTAD version 1.14.0 Index]