get_zScoreCutoff {InPAS}R Documentation

Calculate local background cutoff value

Description

calculate local background z-score cutoff

Usage

get_zScoreCutoff(background, introns, totalCov, utr3, z = 2)

Arguments

background

A character(1) vector, indicating how background coverage is defined.

introns

An object of GenomicRanges::GRanges for introns

totalCov

total coverage, a list of output from get_totalCov() for each chromosome

utr3

An object of GenomicRanges::GRangesList, output of extract_UTR3Anno()

z

Z score cutoff value

Value

A named numeric vector containing local background Z-score cutoff values. The names are GRanges's name for 3' UTRs.

Author(s)

Jianhong Ou, Haibo Liu


[Package InPAS version 2.2.0 Index]