find_valley {InPAS}R Documentation

find the local minimal mean squared error (MSE)

Description

for a giving numeric vectors, calculate the top N local minimal mean squared error. The sites of local minimal MSE are saved if they are in the range of searching start site to searching end site

Usage

find_valley(x, ss, se, n = 1, savedID = NA, filterByPval = TRUE)

Arguments

x

a numeric(n) vector containing MSEs for a given range.

ss

position to start searching positions of local minimal MSE

se

position to end searching positions of local minimal MSE

n

the length of output. If n=-1, output all the local minimal MSE positions.

savedID

saved positions of local minimal MSE

filterByPval

A logical(1) vector, indicating whether tp filter the candidate positions by significant levels (p values) or not.

Value

a numeric vector containing a number of candidate CP sites.

Author(s)

Jianhong Ou


[Package InPAS version 2.2.0 Index]