polish_CPs {InPAS} | R Documentation |
remove the multiple positions of CP sites for same 3' UTRs and only keep the best CP sites for proximal and distal.
polish_CPs(CPs)
CPs |
output of |
a matrix with columns: "fit_value", "Predicted_Proximal_APA", "Predicted_Distal_APA", "utr3start", "utr3end", "type"
Jianhong Ou
adjust_proximalCPs()
, adjust_proximalCPsByPWM()
,
adjust_proximalCPsByNBC()
, get_PAscore2()