ProcessData {IRISFGM}R Documentation

ProcessData

Description

Process data via normalization and imputation.

Usage

ProcessData(object, ...)

.processData(
  object = NULL,
  normalization = "cpm",
  library.size = 1e+05,
  IsImputation = FALSE
)

## S4 method for signature 'IRISFGM'
ProcessData(
  object = NULL,
  normalization = "cpm",
  library.size = 1e+05,
  IsImputation = FALSE
)

Arguments

object

Input IRISFGM object

...

other arguments passed to methods

normalization

two options: (1)library size noralization by using library size factor: 1e6, equal to CPM (count-per-million-reads), or (2) using 'scran' normalization method.

library.size

Sets the scale factor for cpm normalization

IsImputation

imputation method is provided by DrImpute. Default is FALSE.

Value

It will processdata by normalization and imputation.

Examples

 
data("example_object")
example_object <- ProcessData(example_object,
normalization = "cpm")

[Package IRISFGM version 1.2.0 Index]