PlotDimension {IRISFGM}R Documentation

PlotDimension

Description

Generate Umap and it requires user to input cell label index on console window.

Usage

PlotDimension(object, ...)

.plotDimension(object, reduction = "umap", pt_size = 1, idents = NULL)

## S4 method for signature 'IRISFGM'
PlotDimension(object, reduction = "umap", pt_size = 1, idents = NULL)

Arguments

object

Input IRIS-FGM Object

...

other arguments passed to methods

reduction

Choose one of approaches for dimension reduction, including 'pca', 'tsne', 'umap'.

pt_size

Point size, default is 0.

idents

set current idents.

Value

generate plot on umap space.

Examples

data("example_object")
PlotDimension(example_object,idents = "Seurat_r_0.8_k_20")

[Package IRISFGM version 1.2.0 Index]