htx_load {HumanTranscriptomeCompendium}R Documentation

load a SummarizedExperiment shell for the Human Transcriptome Compendium

Description

load a SummarizedExperiment shell for the Human Transcriptome Compendium

Usage

htx_load(
 
    remotePath = "https://biocfound-bigrnatx.s3.us-west-2.amazonaws.com/rangedHtxGeneSE.rds",
  cache = BiocFileCache::BiocFileCache(),
  genesOnly = TRUE
)

Arguments

remotePath

path to an RDS representation of the DelayedArray-based SummarizedExperiment

cache

a BiocFileCache instance, defaulting to value of BiocFileCache()

genesOnly

logical(1) if TRUE return reference to SummarizedExperiment with gene-level quantifications; in this case the remotePath value is set to 'https://s3.amazonaws.com/bcfound-bigrna/rangedHtxGeneSE.rds'.

Value

a RangedSummarizedExperiment instance

Examples

htx_load

[Package HumanTranscriptomeCompendium version 1.10.0 Index]