hildaBarplot {HiLDA} | R Documentation |
Read the raw mutation data with the mutation feature vector format, estimate and plot both mutation signatures and their fractions
hildaBarplot( inputG, hildaResult, sigOrder = NULL, refGroup, sortSampleNum = TRUE, refName = "Control", altName = "Case", charSize = 3 )
inputG |
a MutationFeatureData S4 class output by the pmsignature. |
hildaResult |
a rjags class output by HiLDA. |
sigOrder |
the order of signatures if needed (default: NULL). |
refGroup |
the samples in the reference group (default: NULL). |
sortSampleNum |
whether to sort plots by number of mutations (default: TRUE). |
refName |
the name of reference group (default: Control) |
altName |
the name of the other group (default: Case) |
charSize |
the size of the character on the signature plot (default: 3) |
a list of a signature plot and a barplot of mutational exposures
load(system.file("extdata/sample.rdata", package="HiLDA")) inputFile <- system.file("extdata/hildaLocal.rdata", package="HiLDA") hildaLocal <- readRDS(inputFile) hildaBarplot(G, hildaLocal, refGroup=1:4)