getMutationFeatureVector {HiLDA} | R Documentation |
Get mutation feature vector from context sequence data and reference and alternate allele information
getMutationFeatureVector( context, ref_base, alt_base, strandInfo = NULL, numBases, type )
context |
the context sequence data around the mutated position. This shoud be Biostrings::DNAStringSet class |
ref_base |
the reference bases at the mutated position. |
alt_base |
the alternate bases at the mutated position. |
strandInfo |
transcribed strand information at the mutated position. (this is optional) |
numBases |
the number of flanking bases around the mutated position. |
type |
the type of mutation feature vecotr (should be "independent" or "full"). |
a mutation featuer vector