hildaDiffPlot {HiLDA}R Documentation

Read the raw mutation data with the mutation feature vector format, estimate and plot both mutation signatures and their fractions

Description

Read the raw mutation data with the mutation feature vector format, estimate and plot both mutation signatures and their fractions

Usage

hildaDiffPlot(inputG, hildaResult, sigOrder = NULL, charSize = 3)

Arguments

inputG

a MutationFeatureData S4 class output by the pmsignature.

hildaResult

a rjags class output by HiLDA.

sigOrder

the order of signatures if needed (default: NULL).

charSize

the size of the character on the signature plot (default: 3)

Value

a list of the signature plot and the mean difference plot.

Examples


load(system.file("extdata/sample.rdata", package="HiLDA"))
inputFile <- system.file("extdata/hildaLocal.rdata", package="HiLDA")
hildaLocal <- readRDS(inputFile)

hildaDiffPlot(G, hildaLocal)


[Package HiLDA version 1.8.0 Index]