plotPPI {HPiP} | R Documentation |
Plot the predicted PPIs. This function uses the plot
function of the igraph
.
plotPPI( ppi, edge.name = "ensemble_score", node.color = "grey", edge.color = "orange", cex.node = 4, node.label.dist = 1.5 )
ppi |
A data.frame containing protein-protein interactions with edge score. |
edge.name |
A character string giving an edge attribute name. |
node.color |
The fill color of the node. |
edge.color |
The color of the edge. |
cex.node |
The size of the node. |
node.label.dist |
The distance of the label from the center of the node. |
plotPPI
A PPI plot.
Matineh Rahmatbakhsh, matinerb.94@gmail.com
df <- data.frame( node1 = c("A", "B", "C", "D", "E"), node2 = c("C", "E", "E", "E", "A"), edge.scores = c(0.5, 0.4, 0.3, 0.2, 0.7) ) plotPPI(df, edge.name = "edge.scores")