getHPI {HPiP}R Documentation

Generating Host-Pathogen Protein-Protein Interaction (HP-PPI) Descriptors

Description

This function calculates Host-Pathogen Protein-Protein Interaction (HP-PPI) descriptors via two approaches

Usage

getHPI(pathogenData, hostData, type = c("combine", "kron.prod"))

Arguments

pathogenData

The pathogen descriptor matrix.

hostData

The host descriptor matrix.

type

The interaction type, one or two of "combine" and "kron.prod".

Details

getHPI

Value

A matrix containing the Host-Pathogen Protein-Protein Interaction (HP-PPI) descriptors.

Author(s)

Matineh Rahmatbakhsh matinerb.94@gmail.com

Examples

x <- matrix(c(1, 2, 3, 1), nrow = 2, ncol = 2, byrow = TRUE)
y <- matrix(c(0, 3, 2, 1), nrow = 2, ncol = 2, byrow = TRUE)
getHPI(x, y, "combine")
getHPI(x, y, "kron.prod")

[Package HPiP version 1.0.0 Index]