setQCFlags,NanoStringGeoMxSet-method {GeomxTools} | R Documentation |
Add QC flags to feature and protocol data simultaneously
## S4 method for signature 'NanoStringGeoMxSet' setQCFlags(object, qcCutoffs = DEFAULTS, ...)
object |
name of the object class to perform QC on
|
qcCutoffs |
list of cutoffs and thresholds to use for QC |
... |
optional parameters to pass |
the object that QC was performed on
datadir <- system.file("extdata", "DSP_NGS_Example_Data", package="GeomxTools") demoData <- readRDS(file.path(datadir, "/demoData.rds")) setQCFlags(demoData)