checkQCFlags {GeomxTools} | R Documentation |
Check QC Flags in the GeoMxSet and removes the probe or sample from the object
checkQCFlags(object, ...)
object |
name of the NanoStringGeoMxSet object to check the QC Flags |
... |
for other arguments |
a NanoStringGeoMxSet object probes and samples failing QC removed
datadir <- system.file("extdata", "DSP_NGS_Example_Data", package = "GeomxTools" ) demoData <- readRDS(file.path(datadir, "/demoData.rds")) QCobject <- checkQCFlags(demoData)