DENBth {GeoDiff}R Documentation

Generate DE table using the inference list generated by coefNBth or contrastNBth

Description

Generate DE table using the inference list generated by coefNBth or contrastNBth

Usage

DENBth(object, ...)

## S4 method for signature 'list'
DENBth(object, variable, NAto1 = TRUE, padj = TRUE, padj_method = "BH")

Arguments

object

inference list from coefNBth or contrastNBth

...

additional argument list that might be used

variable

needed to construct

NAto1

whether to replace NA in pvalue by 1

padj

whether to adjust p value

padj_method

p value adjustment method, default="BH"

Value

DEtab, DE table

Examples

data(NBthmDEmod2)
coeff <- coefNBth(NBthmDEmod2)
DEtab <- DENBth(coeff, variable = "regiontubule")

[Package GeoDiff version 1.0.0 Index]