PCAGenomicSignatures-methods {GenomicSuperSignature}R Documentation

Methods and accesors for PCAGenomicSignatures object

Description

The default contents of PCAGenomicSignatures object, with a set of accessor and setter generic functions, which extract either the assay, colData, metadata, or trainingData slots of a PCAGenomicSignatures-class object. When you create this object, colData$studies should be populated before adding any information in trainingData slot

Usage

## S4 replacement method for signature 'PCAGenomicSignatures'
studies(x) <- value

## S4 replacement method for signature 'PCAGenomicSignatures'
silhouetteWidth(x) <- value

## S4 replacement method for signature 'PCAGenomicSignatures'
gsea(x) <- value

## S4 replacement method for signature 'PCAGenomicSignatures'
trainingData(x) <- value

## S4 replacement method for signature 'PCAGenomicSignatures'
mesh(x) <- value

## S4 replacement method for signature 'PCAGenomicSignatures'
PCAsummary(x) <- value

## S4 method for signature 'PCAGenomicSignatures'
studies(x)

## S4 method for signature 'PCAGenomicSignatures'
silhouetteWidth(x)

## S4 method for signature 'PCAGenomicSignatures'
gsea(x)

## S4 method for signature 'PCAGenomicSignatures'
trainingData(x)

## S4 method for signature 'PCAGenomicSignatures'
mesh(x)

## S4 method for signature 'PCAGenomicSignatures'
PCAsummary(x)

## S4 method for signature 'PCAGenomicSignatures'
show(object)

Arguments

value

See details.

object, x

A PCAGenomicSignatures object

Details

Value

PCAGenomicSignatures object with multiple setters or accessors

Slots

trainingData

A DataFrame class object for metadata associated with training data

Setters

Setter method values (i.e., function(x) <- value):

Accessors

All the accessors inherited from SummarizedExperiment are available and the additional accessors for PCAGenomicSignatures specific data are listed below.

Examples

data(miniRAVmodel)
miniRAVmodel


[Package GenomicSuperSignature version 1.2.1 Index]