calcExpectedPartitionsRef {GenomicDistributions} | R Documentation |
This function is a wrapper for calcExpectedPartitions
that uses
built-in partitions for a given reference genome assembly.
calcExpectedPartitionsRef(query, refAssembly, bpProportion = FALSE)
query |
A GenomicRanges or GenomicRangesList object with query regions |
refAssembly |
A character vector specifying the reference genome
assembly (*e.g.* 'hg19'). This will be used to grab annotation
models with |
bpProportion |
logical indicating if overlaps should be calculated based on number of base pairs overlapping with each partition. bpProportion=FALSE does overlaps in priority order, bpProportion=TRUE counts number of overlapping base pairs between query and each partition. |
A data.frame indicating the number of query region overlaps in several genomic partitions.
calcExpectedPartitionsRef(vistaEnhancers, "hg19")