plotDinuclFreq {GenomicDistributions} | R Documentation |
Given calcDinuclFreq
or calcDinuclFreqRef
results, this function
generates a violin plot of dinucleotide frequency
plotDinuclFreq(DNFDataTable)
DNFDataTable |
A data.table, data.frame, or a list of dinucleotide counts -
results from |
A ggplot object plotting distribution of dinucleotide content in query regions
DNFDataTable = data.table::data.table(GC = rnorm(400, mean=0.5, sd=0.1), CG = rnorm(400, mean=0.5, sd=0.5), AT = rnorm(400, mean=0.5, sd=1), TA = rnorm(400, mean=0.5, sd=1.5)) DNFPlot = plotDinuclFreq(DNFDataTable) ## Not run: query = system.file("extdata", "vistaEnhancers.bed.gz", package="GenomicDistributions") GRquery = rtracklayer::import(query) refAssembly = 'hg19' DNF = calcDinuclFreqRef(GRquery, refAssembly) DNFPlot2 = plotDinuclFreq(DNF) ## End(Not run)