exonsToTranscripts {GeneStructureTools} | R Documentation |
Convert an exon-level gtf annotation to a transcript-level gtf annotation
exonsToTranscripts(exons)
exons |
GRanges object with exons |
GRanges object with transcripts
Beth Signal
Other gtf manipulation: UTR2UTR53
,
addBroadTypes
,
filterGtfOverlap
,
removeDuplicateTranscripts
,
removeSameExon
,
reorderExonNumbers
gtf <- rtracklayer::import(system.file("extdata","example_gtf.gtf", package = "GeneStructureTools")) exons <- gtf[gtf$type=="exon" & gtf$transcript_id=="ENSMUST00000126412.1"] exons transcripts <- exonsToTranscripts(exons) transcripts