makeGeneModel {GeneStructureTools}R Documentation

Convert GRanges gene model to data.frame for visualisation with Gviz

Description

Convert GRanges gene model to data.frame for visualisation with Gviz

Usage

makeGeneModel(transcript)

Arguments

transcript

GRanges of gene model to be visualised

Value

data.frame of a gene model for visualisation

Author(s)

Beth Signal

See Also

Other Gviz gene structure visualisation: annotateGeneModel

Examples

gtf <- rtracklayer::import(system.file("extdata", "example_gtf.gtf",
package="GeneStructureTools"))
transcript <- gtf[gtf$type=="exon" & gtf$gene_name=="Neurl1a"]
geneModel <- makeGeneModel(transcript)

[Package GeneStructureTools version 1.14.0 Index]