reorderExonNumbers {GeneStructureTools} | R Documentation |
Reorder the exon numbers in a gtf annotation
reorderExonNumbers(exons, by = "transcript_id")
exons |
GRanges object made from a GTF with ONLY exon annotations (no gene, transcript, CDS etc.) |
by |
what column are the transcripts grouped by? |
The same input GRanges, but with exon numbers reordered.
Beth Signal
Other gtf manipulation: UTR2UTR53
,
addBroadTypes
,
exonsToTranscripts
,
filterGtfOverlap
,
removeDuplicateTranscripts
,
removeSameExon
gtf <- rtracklayer::import(system.file("extdata","example_gtf.gtf", package = "GeneStructureTools")) exons <- gtf[gtf$type=="exon"] exons <- reorderExonNumbers(exons)