browseNetwork {GeneNetworkBuilder} | R Documentation |
plot network generated by polishNetwork
browseNetwork( gR = graphNEL(), layoutType = c("fdp", "dot", "neato", "twopi", "circo"), width = NULL, height = NULL, maxNodes = 500, ... )
gR |
an object of graphNEL |
layoutType |
layout type. see GraphvizLayouts |
width |
width of the figure |
height |
height of the figure |
maxNodes |
max nodes number to plot. Because if there are two many nodes, the running time will be too long. |
... |
parameters used by GraphvizLayouts |
An object of class htmlwidget that will intelligently print itself into HTML in a variety of contexts including the R console, within R Markdown documents, and within Shiny output bindings.
data("ce.miRNA.map") data("example.data") data("ce.interactionmap") data("ce.IDsMap") sifNetwork<-buildNetwork(example.data$ce.bind, ce.interactionmap, level=2) cifNetwork<-filterNetwork(rootgene=ce.IDsMap["DAF-16"], sifNetwork=sifNetwork, exprsData=uniqueExprsData(example.data$ce.exprData, "Max", condenseName='logFC'), mergeBy="symbols", miRNAlist=as.character(ce.miRNA.map[ , 1]), tolerance=1) gR<-polishNetwork(cifNetwork) browseNetwork(gR)