PlotStars {FlowSOM} | R Documentation |
Plot star charts
PlotStars( fsom, markers = fsom$map$colsUsed, colorPalette = FlowSOM_colors, list_insteadof_ggarrange = FALSE, ... )
fsom |
FlowSOM object, as generated by |
markers |
Markers to plot (will be parsed by GetChannels) |
colorPalette |
ColorPalette to use |
list_insteadof_ggarrange |
If FALSE (default), the plot and the legend are combined by ggarrange. If TRUE, the seperate elements are returned in a list, to allow further customization. |
... |
Additional arguments to pass to |
Plot FlowSOM grid or tree, where each node is represented by a star chart indicating median marker values
Nothing is returned. A plot is drawn in which each node is represented by a star chart indicating the median fluorescence intensities. Resets the layout back to 1 plot at the end.
PlotMarker
, PlotVariable
,
PlotFlowSOM
, PlotLabels
,
PlotNumbers
, PlotPies
,
QueryStarPlot
, PlotSD
# Read from file, build self-organizing map and minimal spanning tree fileName <- system.file("extdata", "68983.fcs", package = "FlowSOM") flowSOM.res <- FlowSOM(fileName, compensate = TRUE, transform = TRUE, scale = TRUE, colsToUse = c(9, 12, 14:18)) # Plot stars indicating the MFI of the cells present in the nodes PlotStars(flowSOM.res)